
For biotech companies operating in the animal health and agricultural sectors, navigating the USDA submission process is a critical step toward bringing innovative products to market.
Whether you’re developing vaccines, probiotics, or other biologics, understanding the USDA’s regulatory framework can mean the difference between streamlined approval and costly delays.
At Sigma BioVet Sciences, we specialize in guiding companies through this intricate process, ensuring compliance and accelerating time-to-market. Here’s a comprehensive guide to what every biotech company should know about the USDA submission process.
Who Oversees What? Understanding the USDA’s Role

The USDA is primarily responsible for regulating veterinary biologics—products such as vaccines, diagnostics, and other treatments derived from living organisms. Within the USDA, the Center for Veterinary Biologics (CVB) under the Animal and Plant Health Inspection Service (APHIS) oversees the approval process. The CVB’s goal is to ensure these products are safe, effective, and not harmful to the environment.
Key product categories regulated by the USDA include:
Animal Vaccines: Used for disease prevention in livestock, poultry, and companion animals.
Probiotics: Beneficial microbial products for improving health and productivity.
Diagnostics: Tools for detecting diseases in animals.
The USDA Submission Process: Step-by-Step
1. Pre-Submission Preparation
Before initiating a submission, companies must:
Characterize the Product: Fully identify the biological agent, including its strain, genetic modifications, and intended use.
Conduct Preclinical Studies: Generate data on safety and efficacy through laboratory and small-scale studies.
Define Regulatory Pathways: Determine whether the product falls under USDA jurisdiction or overlaps with FDA oversight, especially for combination products.
2. Licensing and Facility Approval
The USDA requires that the facilities where biologics are produced meet strict standards. Companies must:
Obtain a USDA Establishment License: This involves inspections to verify that the manufacturing facility adheres to Good Manufacturing Practices (GMP).
Submit Facility Plans: Detailed layouts and operational protocols to demonstrate compliance.
3. File the Product License Application
The product license application is the core of the USDA submission process. Key components include:
Product Outline: A detailed description of the product, including its formulation, intended use, and storage requirements.
Efficacy Studies: Data from controlled trials showing that the product performs as claimed.
Safety Studies: Evidence that the product is safe for the target species, users, and the environment.
Labeling: Proposed product labels that meet USDA requirements for accuracy and transparency.
4. Conduct Field Trials
Field trials are critical for demonstrating the product’s performance under real-world conditions. Companies must:
Design Protocols: Align trial design with USDA guidelines to ensure results are valid.
Submit Protocols for Approval: The USDA reviews and approves trial protocols before they commence.
Analyze Results: Compile and present data showing the product’s efficacy and safety.
5. Product Testing and Validation
The USDA may require additional testing, including:
Lot Release Testing: Ensures each batch meets quality and safety standards.
Post-Market Surveillance Plans: Outlines how the company will monitor product performance after approval.
6. Review and Approval
The USDA evaluates the entire submission package, which includes:
Product efficacy and safety data.
Manufacturing facility compliance.
Labeling accuracy and claims.
Approval timelines vary depending on the product complexity and completeness of the submission.
Key Challenges in the USDA Submission Process
Regulatory Complexity

The USDA submission process is governed by a dense web of regulations, standards, and evolving policies. For biotech companies, keeping up with these changes can be a formidable challenge. Each product type—from biologics to probiotics—has specific requirements that vary in complexity. The need to ensure alignment with both general and program-specific guidelines means companies must dedicate significant resources to staying informed and compliant. Failure to do so can result in costly delays, additional scrutiny, or outright rejections.
Data Gaps

Incomplete or inconsistent data remains one of the most common reasons for submission delays. Trials that fail to account for variables, inconsistencies in data presentation, or missing information can halt the review process. For instance, field trials might overlook critical environmental factors or fail to use validated endpoints, rendering results inconclusive. Meticulous planning, rigorous documentation, and alignment with USDA’s data standards are crucial for avoiding these pitfalls and ensuring that submissions proceed smoothly.
Cross-Agency Jurisdiction

Navigating cross-agency jurisdiction is particularly challenging for products that combine biologics with pharmaceuticals or feed additives. Such products may fall under the oversight of both the USDA and the FDA, requiring dual compliance with each agency’s distinct regulations. The complexity of coordinating with multiple regulatory bodies can lead to confusion, increased costs, and prolonged timelines. Companies must clearly define their product’s regulatory pathway early in development to streamline the submission process.

How Sigma BioVet Sciences Can Help
At Sigma BioVet Sciences, we recognize that the USDA submission process is more than just a regulatory hurdle—it’s an opportunity to establish credibility and pave the way for market success. Our comprehensive services are designed to address the unique challenges of biotech companies, ensuring that every submission is both efficient and effective. We bring a deep expertise in microbiology and veterinary medicine, particularly in the realms of probiotics and microbial products.
Probiotics and Microbial Expertise: We provide advanced regulatory and development guidance for probiotics, focusing on optimizing the balance of microbial flora in animals for improved health and productivity. Our expertise helps ensure that these products meet the stringent safety and efficacy standards required by the USDA, addressing both direct health benefits and environmental safety.
Vaccine Development and Regulation: At Sigma BioVet Sciences, we specialize in guiding the vaccine development process by establishing robust protocols for clinical trials. Our team assists in designing studies that accurately assess the safety and efficacy of vaccines in target species, ensuring compliance with USDA regulations. We also excel in preparing comprehensive project reports that detail trial results and support regulatory submissions. This focused approach helps streamline the approval process, allowing for the timely launch of vital vaccines in the market.
Pet Food Safety and Efficacy: We navigate the complex regulatory pathways for pet food products, ensuring compliance with nutritional and safety standards. Our services include formulation review, ingredient sourcing verification, and conducting feeding trials to substantiate health claims.
Diagnostics for Animal Health: We help develop and validate diagnostic tools that are crucial for disease detection and management in veterinary settings. Our expertise extends to supporting the regulatory submission process for these tools, ensuring they meet the USDA’s requirements for accuracy and reliability.
Technical Writing and Documentation: With our profound scientific knowledge, we contribute to creating detailed, clear, and compliant technical submissions. We assist in articulating the science behind biotech products compellingly and accurately, ensuring that submissions are not only compliant but also persuasive.
Educational Workshops and Training: We lead workshops that demystify the USDA submission process for our clients, focusing on microbial products, vaccines, pet food, and diagnostics. Our sessions provide valuable insights into best practices for safety, handling, and trial design, enhancing our clients' understanding and ability to navigate the regulatory landscape.
Trial Design and Execution:
Customized Protocols: We design trial protocols that not only meet USDA guidelines but also account for real-world conditions, ensuring robust and reproducible results.
Multi-Site Trials: By managing trials across varied geographic locations, we generate comprehensive data that strengthens your product’s evidence base.
Innovation in Biotech Products: We consult on the integration of innovative solutions in animal health, including probiotics, vaccines, pet food, and diagnostic tools. We drive the development of new products and the improvement of existing ones, fostering collaborative research efforts with leading academic and research institutions.
Strategic Regulatory Planning: Our experience with dual regulatory oversight by USDA and FDA is invaluable for products that straddle the requirements of both agencies. We help our clients strategize their submissions, anticipate potential challenges, and manage risks effectively, ensuring a smoother regulatory journey.
Ready to Simplify Your USDA Submission Process?
The USDA submission process is complex, but with Sigma BioVet Sciences as your partner, it becomes manageable. Our deep regulatory expertise and commitment to your success help you navigate each step with assurance.
Contact us today to learn how we can support your journey to USDA approval and beyond. Together, we’ll bring your innovative products to market and make a lasting impact in the animal health industry.